Package: PTE 2.0.1
PTE: Personalized Treatment Evaluator
Provides out-of-sample inference for evaluating whether a pre-specified personalized treatment recommendation model improves outcomes relative to business-as-usual treatment assignment. Supports continuous, binary, and survival endpoints from two-arm randomized trials, cross-validated performance estimates, confidence intervals and hypothesis tests based on the bootstrap, and data-driven selection of the m-out-of-n bootstrap size. Default model-fitting kernels are implemented in C++ through 'Rcpp' for computational efficiency.
Authors:
PTE_2.0.1.tar.gz
PTE_2.0.1.zip(r-4.7-x86_64)PTE_2.0.1.zip(r-4.7-arm64)PTE_2.0.1.zip(r-4.6-x86_64)PTE_2.0.1.zip(r-4.6-arm64)PTE_2.0.1.zip(r-4.5-x86_64)
PTE_2.0.1.tgz(r-4.6-x86_64)PTE_2.0.1.tgz(r-4.6-arm64)PTE_2.0.1.tgz(r-4.5-x86_64)PTE_2.0.1.tgz(r-4.5-arm64)
PTE_2.0.1.tar.gz(r-4.7-arm64)PTE_2.0.1.tar.gz(r-4.7-x86_64)PTE_2.0.1.tar.gz(r-4.6-arm64)PTE_2.0.1.tar.gz(r-4.6-x86_64)
PTE_2.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PTE/json (API)
| # Install 'PTE' in R: |
| install.packages('PTE', repos = c('https://kapelner.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kapelner/pte/issues
Pkgdown/docs site:https://kapelner.github.io
- continuous_example - Mock RCT data with a continuous endpoint
- survival_example - Mock RCT data with a survival endpoint
personalized medicineprecision medicinepersonalized treatment recommendationsindividualized treatment rulestreatment regimesheterogeneous treatment effectstreatment policy evaluationpolicy value estimationcomparative effectiveness researchcausal inferencerandomized controlled trialsclinical trialsstatistical inferencebootstrap inferencem-out-of-n bootstrapcross-validationsurvival analysisr packagebootstrapcausal-inferenceclinical-trialscomparative-effectivenessheterogeneous-treatment-effectsindividualized-treatment-rulespersonalized-medicinepersonalized-treatmentpolicy-evaluationprecision-medicinerandomized-controlled-trialsstatistical-inferencesurvival-analysistreatment-policy-evaluationtreatment-regimescppopenmp
Last updated from:9bcf49ceaf. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 207 | ||
| linux-devel-x86_64 | OK | 275 | ||
| source / vignettes | OK | 252 | ||
| linux-release-arm64 | OK | 207 | ||
| linux-release-x86_64 | OK | 286 | ||
| macos-release-arm64 | OK | 207 | ||
| macos-release-x86_64 | OK | 367 | ||
| macos-oldrel-arm64 | OK | 193 | ||
| macos-oldrel-x86_64 | OK | 495 | ||
| windows-devel-arm64 | OK | 286 | ||
| windows-devel-x86_64 | OK | 280 | ||
| windows-release-arm64 | OK | 302 | ||
| windows-release-x86_64 | OK | 189 | ||
| windows-oldrel-x86_64 | OK | 243 | ||
| wasm-release | OK | 120 |
Exports:PTE_bootstrap_inferenceselect_optimal_m_prop
Dependencies:backportscheckmateclicodetoolscpp11doParallelfarverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecycleMatrixR6RColorBrewerRcppRcppEigenRcppNumericalrlangS7scalessurvivalvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Mock RCT data with a continuous endpoint | continuous_example |
| Plots a summary of the bootstrap samples | plot.PTE_bootstrap_results |
| Prints a summary of the model to the console | print.PTE_bootstrap_results |
| Personalized Medicine Inference | PTE-package PTE |
| Bootstrap inference for a prespecified personalization / recommendation model | PTE_bootstrap_inference |
| Select an optimal m-out-of-n bootstrap resample size via the minimum volatility method | select_optimal_m_prop |
| Prints a summary of the model to the console | summary.PTE_bootstrap_results |
| Mock RCT data with a survival endpoint | survival_example |